Specificity of the Hox member Deformed is determined by transcription factor levels and binding site affinities

Pinto PB, Domsch K, Gao X, Wölk M, Carnesecchi J, Lohmann I.
Nat Comm, 2022

doi: 10.1038/s41467-022-32408-8

Single-cell RNA sequencing of motoneurons identifies regulators of synaptic wiring in Drosophila embryos

Velten J, Gao X, van Nierop y Sanchez P, Domsch K, Agarwal R, Bognar L, Paulsen M, Velten L, Lohmann I.
Mol Syst Biol, 2022

doi: 10.15252/msb.202110255

The Hox transcription factor Ultrabithorax binds RNA and regulates co-transcriptional splicing through an interplay with RNA polymerase IIs

Carnesecchi J, Boumpas P, van Nierop y Sanchez P, Domsch K, Daniel Pinto H, Borges Pinto P, Lohmann I.
Nucleic Acids Res, 2022

doi: 10.1093/nar/gkab1250

An Evolutionary Perspective on Hox Binding Site Preferences in Two Different Tissues

Folkendt L, Lohmann I, Domsch K.
J Dev Biol, 2021

doi: 10.3390/jdb9040057

Hox dosage contributes to flight appendage morphology in Drosophila

Paul R, Giraud G, Domsch K, Duffraisse M, Marmigère F, Khan S, Vanderperre S, Lohmann I, Stoks R, Shashidhara LS, Merabet S.
Nat Comm, 2021

doi: 10.1038/s41467-021-23293-8

The Hox transcription factor Ubx ensures somatic myogenesis by suppressing the mesodermal master regulator Twist

Domsch K, Schröder J, Janeschik M, Schaub C, Lohmann I.
Cell Rep, 2021

doi: 10.1016/j.celrep.2020.108577

Role of a versatile peptide motif controlling Hox nuclear export and autophagy in the Drosophila fat body

Duffraisse M, Paul R, Carnesecchi J, Hudry B, Banreti A, Reboulet J, Ajuria L, Lohmann I, Merabet S.
J Cell Sci, 2020

doi: 10.1242/jcs.241943

Closing the gap: a roadmap to single-cell regulatory genomics

Carnesecchi J, Lohmann I.
Mol Syst Biol, 2020

doi: 10.15252/msb.20209497

ATF4-induced Warburg metabolism drives over-proliferation in Drosophila

Sorge S, Theelke J, Yildirim K, Hertenstein H, McMullen E, Müller S, Altbürger C, Schirmeier S, Lohmann I.
Cell Rep, 2020

doi: 10.1016/j.celrep.2020.107659

Multi-level and Lineage-Specific Interactomes of the Hox Transcription Factor Ubx Contribute to its Functional Specificity

Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I.
Nat Comm, 2020

doi: 10.1038/s41467-020-15223-x

The Hox transcription factor Ubx stabilizes lineage commitment by suppressing cellular plasticity in Drosophila

Domsch K, Carnesecchi C, Disela V, Friedrich J, Trost N, Ermakova O, Polychronidou M, Lohmann I.
eLife, 2019

doi: 10.7554/eLife.42675

Nuclear export in somatic cyst cells controls cyst cell-germline coordination and germline differentiation in the Drosophila testis

Papagiannouli F, Fuller MT, Lohmann I.
bioRxiv, 2018

doi: 10.1101/452466

WEADE: A Workflow for Enrichment Analysis and Data Exploration

Trost N, Rempel E, Ermakova O, Tamirisa S, Pârcălăbescu L, Boutros M, Lohmann JU, Lohmann I.
PLoS One, 2018

doi: 10.1371/journal.pone.0204016

Decoding the Regulatory Logic of the Drosophila Male Stem Cell System

Tamirisa S, Papagiannouli F, Rempel E, Ermakova O, Trost N, Zhou J, Mundorf J, Brunel S, Ruhland N, Boutros M, Lohmann JU, Lohmann I.
Cell Rep, 2018

doi: 10.1016/j.celrep.2018.08.013

Hox Transcription Factors: an overview of multi-step regulators of gene expression

Carnesecchi J, Pinto PB, Lohmann I.
Int J Dev Biol, 2018

doi: 10.1387/ijdb.180294il

Stk33 is required for spermatid differentiation and male fertility in mice

Martins LR, Bung RK, Koch S, Richter K, Schwarzmüller L, Terhardt D, Kurtulmus B, Niehrs C, Rouhi A, Lohmann I, Pereira G, Fröhling S, Glimm H, Scholl C.
Dev Biol, 2017

doi: 10.1016/j.ydbio.2017.11.007

Hox Function Is Required for the Development and Maintenance of the Drosophila Feeding Motor Unit

Friedrich J, Sorge S, Bujupi F, Eichenlaub MP, Schulz NG, Wittbrodt J, Lohmann I.
Cell Rep, 2016

doi: 10.1016/j.celrep.2015.12.077

The HOX-Apoptosis Regulatory Interplay in Development and Disease

Domsch K, Papagiannouli F, Lohmann I.
Curr Top Dev Biol, 2015

doi: 10.1016/bs.ctdb.2015.07.014

Stage-Specific Control of Niche Positioning and Integrity in the Drosophila Testis

Schardt L, Ander JJ, Lohmann I, Papagiannouli F.
Mech Dev, 2015

doi: 10.1016/j.mod.2015.07.009

Stage-Specific Control of Stem Cell Niche Architecture in the Drosophila Testis by the Posterior Hox Gene Abd-B

Papagiannouli F, Lohmann I.
Comput Struct Biotechnol J, 2015

doi: 10.1016/j.csbj.2015.01.001

Toward a New Twist in Hox and TALE DNA-Binding Specificity

Merabet S, Lohmann I.
Dev Cell, 2015

doi: 10.1016/j.devcel.2015.01.030

Hox Transcriptomics in Drosophila Embryos

Polychronidou M, Lohmann I.
Methods Mol Biol, 2014

doi: 10.1007/978-1-4939-1242-1_12

The Hox Gene Abd-B Controls Stem Cell Niche Function in the Drosophila Testis

Papagiannouli F, Schardt L, Grajcarek J, Ha N, Lohmann I.
Dev Cell, 2014

doi: 10.1016/j.devcel.2013.12.016

Cell-Type Specific cis-Regulatory Networks: Insights from Hox Transcription Factors

Polychronidou M, Lohmann I.
Fly (Austin), 2013

doi: 10.4161/fly.22939

COPS: Detecting Co-Occurrence and Spatial Arrangement of Transcription Factor Binding Motifs in Genome-Wide Datasets

Ha N, Polychronidou M, Lohmann I.
PLoS One, 2012

doi: 10.1371/journal.pone.0052055

The cis-Regulatory Code of Hox Function in Drosophila

Sorge S, Ha N, Polychronidou M, Friedrich J, Bezdan D, Kaspar P, Schaefer MH, Ossowski S, Henz SR, Mundorf J, Rätzer J, Papagiannouli F, Lohmann I.
EMBO J, 2012

doi: 10.1038/emboj.2012.179

Shaping the Niche: Lessons from the Drosophila Testis and Other Model Systems

Papagiannouli F, Lohmann I.
Biotechnol J, 2012

doi: 10.1002/biot.201100352

The Transcription Factor Grainy Head and the Steroid Hormone Ecdysone Cooperate During Differentiation of the Skin of Drosophila melanogaster

Gangishetti U, Veerkamp J, Bezdan D, Schwarz H, Lohmann I, Moussian B.
Insect Mol Biol, 2012

doi: 10.1111/j.1365-2583.2012.01134.x

Antagonistic Regulation of Apoptosis and Differentiation by the Cut Transcription Factor Represents a Tumor-Suppressing Mechanism in Drosophila

Zhai Z, Ha N, Papagiannouli F, Hamacher-Brady A, Brady N, Sorge S, Bezdan D, Lohmann I.
PLoS Genet, 2012

doi: 10.1371/journal.pgen.1002582

Functional Dissection of the Hox Protein Abdominal-B in Drosophila Cell Culture

Zhai Z, Yang X, Lohmann I.
Biochem Biophys Res Commun, 2011

doi: 10.1016/j.bbrc.2011.09.154

Vectors for Efficient and High-Throughput Construction of Fluorescent Drosophila Reporters Using the PhiC31 Site-Specific Integration System

Boy AL, Zhai Z, Habring-Müller A, Kussler-Schneider Y, Kaspar P, Lohmann I.
Genesis, 2010

doi: 10.1002/dvg.20637

Cellular Analysis of Newly Identified Hox Downstream Genes in Drosophila

Zhai Z, Fuchs AL, Lohmann I.
Eur J Cell Biol, 2010

doi: 10.1016/j.ejcb.2009.11.012

Expression of the Apoptosis Gene Reaper in Homeotic, Segmentation and Other Mutants in Drosophila

Zhai Z, Stein MA, Lohmann I.
Gene Expr Patterns, 2009

doi: 10.1016/j.gep.2009.01.004

Multifactorial Regulation of a Hox Target Gene

Stöbe P, Stein MA, Habring-Müller A, Bezdan D, Fuchs AL, Hueber SD, Wu H, Lohmann I.
PLoS Genet, 2009

doi: 10.1371/journal.pgen.1000412

Shaping Segments: Hox Gene Function in the Genomic Age

Hueber SD, Lohmann I.
Bioessays, 2008

doi: 10.1002/bies.20823

Comparative Analysis of Hox Downstream Genes in Drosophila

Hueber SD, Bezdan D, Henz SR, Blank M, Wu H, Lohmann I.
Development, 2007

doi: 10.1242/dev.02746

Hox Genes: Realising the Importance of Realisators

Lohmann I.
Curr Biol, 2006

doi: 10.1016/j.cub.2006.10.044

Dissecting the Regulation of the Drosophila Cell Death Activator Reaper

Lohmann I.
Gene Expr Patterns, 2003

PMID: 12711543

The Drosophila Hox Gene Deformed Sculpts Head Morphology Via Direct Regulation of the Apoptosis Activator Reaper

Lohmann I, McGinnis N, Bodmer M, McGinnis W.
Cell, 2002

PMID: 12202035

Hox Genes: It's All a Matter of Context

Lohmann I, McGinnis W.
Curr Biol, 2002

PMID: 12176372